Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between CodonsRodrigue, N.; Kleinman, C. L.; Philippe, H.; Lartillot, N. · Molecular Biology and Evolution · 2009

The Importance of being Genomic: Non-coding and Coding Sequences Suggest Different Models of Toxin Multi-gene Family EvolutionMalhotra, Anita; Creer, Simon; Harris, John B.; Thorpe, Roger S. · Toxicon · 2015

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profilesRodrigue, N.; Philippe, H.; Lartillot, N. · Proceedings of the National Academy of Sciences · 2010

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profilesNicolas Rodrigue, Hervé Philippe, Nicolas Lartillot and David M. Hillis · Proceedings of the National Academy of Sciences of the United States of America · 2010

MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolutionJun Wang; Peter D Keightley; Toby Johnson · 2006

Context-Dependent Evolutionary Models for Non-Coding Sequences: An Overview of Several Decades of Research and an Analysis of Laurasiatheria and Primate EvolutionGuy Baele · 2012

Protein inference: a reviewHuang, T.; Wang, J.; Yu, W.; He, Z. · Briefings in Bioinformatics · 2012

Pattern recognition in bioinformaticsde Ridder, D.; de Ridder, J.; Reinders, M. J. T. · Briefings in Bioinformatics · 2013

EditorialValiente, G.; Pesole, G. · Briefings in Bioinformatics · 2012

Mathematical modeling of biological systemsMotta, S.; Pappalardo, F. · Briefings in Bioinformatics · 2013

Metabolomics technology and bioinformaticsShulaev, V. · Briefings in Bioinformatics · 2006

Genome assembly reborn: recent computational challengesPop, M. · Briefings in Bioinformatics · 2009

Swiss-PDB Viewer (Deep View)Kaplan, W. · Briefings in Bioinformatics · 2001

ProDom: Automated clustering of homologous domainsServant, F. · Briefings in Bioinformatics · 2002